http://rbvi.ucsf.edu/chimerax/docs/user/tools/mousemodes.html WebFeb 11, 2024 · [chimerax-users] Show atom style as spheres and stick simultaneously Mary Liu squirrelphage at gmail.com Thu Feb 10 18:07:44 PST 2024 ... however. Example commands: > > > > open 1gcn > > open 1gcn > > hide ribbon > > show atoms > > style #2 sphere > > transparency #2 50 target a > > > > Alternatively, you could show molecular …
UCSF ChimeraX User Guide
WebCategory: Membership rules, in order of application: solvent: of the following two, the set with the greater number of residues: “small solvent” candidate set: residues of up to 3 atoms named WAT, HOH, and DOD, plus singleton atoms (i.e., not covalently bonded to other atoms) of atomic number 6-8 in single-atom residues “other solvent” candidate set: … WebUCSF ChimeraX - I - Overview Jean-Yves Sgro April26,2024 Contents ... ribbons,surface,stick,sphere,ball-and-stick,atomcolorbyelement,atomcolorbychain, andhydrogenbonds. 15. UCSF ChimeraX - I - Overview ... style Ligandsandcloseaminoacids,watermoleculesshownas spheres. Showmoleculeinballand inclination to manage english clubs
[chimerax-users] Show atom style as spheres and stick …
WebA ribbon is a smooth path with rectangular cross-section connecting a series of atoms or markers. The default width w and height h of the cross-section are 1.0 and 0.1, respectively. The yaxis and twist options control ribbon orientation and how it varies along the path. If neither is specified, the ribbon normal varies along the path so that ... WebThe ChimeraX Menu. Although most functionality is currently in commands, the ChimeraX menu includes basic file operations and undo ... Ribbons/Slabs – cartoon style initial defaults + nucleotide bases as rectangular boxes Cylinders/Stubs – cartoon style protein α-helix cylinders + nucleotide stubs (half-rungs) Webcartoon style – width, thickness, and shape; protein secondary structure representations cartoon tether – appearance of connectors between cartoon and offset backbone … See also: style, cartoon, surface, volume, Model Panel, Basic Actions, Toolbar, … The distance style command changes the style of existing distance monitors, and … Command: angle Usage: angle spec Usage: angle atom-spec [ angle ] [ move … A ribbon is a smooth path with rectangular cross-section connecting a series of … Command: dssp Usage: dssp atom-spec [ energyCutoff c ] [ minHelixLen N ] [ … Show nucleic-acid residue pairs connected by hydrogen bond pseudobonds as rods … ChimeraX Command Files. ChimeraX command files (scripts) are plain text … Toolbar: Molecule Display. Icons in the Molecule Display tab of the Toolbar … For example, ribbon is aliased to cartoon $*, allowing any of the following to work: … Whether to change the dimensions of any displayed ribbon (cartoon) to: These … inbox nagercoil